1. Advances in Plant Genotyping - Where the Future Will Take Us
Dhwani A. Patel, Manuel Zander, Jessica Dalton-Morgan, and Jacqueline Batley
2. Molecular Marker Applications in Plants
Alice C. Hayward, Reece Tollenaere, Jessica Dalton-Morgan, and Jacqueline Batley
3. Bioinformatics: Identification of Markers from Next Generation Sequence Data
Pradeep Ruperao and David Edwards
4. Molecular Marker Databases
Kaitao Lai, Michal Lorenc, and David Edwards
5. Plant Genotyping Using Fluorescently Tagged Inter Simple Sequence Repeats (ISSRs): Basic Principles and Methodology
Linda M. Prince
6. SSR Genotyping
Annaliese S. Mason
7. Genotyping Analysis Using an RFLP Assay
Shutao Dai and Yan Long
8. DNA Barcoding for Plants
&
nbsp; Natasha de Vere, Tim C.G. Rich, Sarah A. Trinder and Charlotte Long
9. Multiplexed Digital Gene Expression Analysis for Genetical Genomics in Large Plant Populations
Christian Obermeier, Bertha M. Salazar-Colqui, Viola Spamer, and Rod Snowdon
10. SNP Genotyping by Heteroduplex Analysis
Norma Paniego, Corina Fusari, Veronica Lia, and Andrea Puebla
11. Application of the High-Resolution Melting Technique for Gene Mapping and SNP Detection in Plants
David Chagne
12. Challenges of Genotyping Polyploid Species
Annaliese S. Mason
13. Genomic Reduction Assisted Single Nucleotide Polymorphism Discovery using 454-Pyrosequencing
Peter J. Maughan, Joshua A. Udall, and Eric N. Jellen
14. Inter-SINE Amplified Polymorphism (ISAP) for Rapid and Robust Plant Genotyping
Torsten Wenke, Kathrin M. Seibt, Thomas Doebel, Katja Muders, and Thomas Schmidt
15. Screening of Mutations by TILLING in Plants
Nian Wang and Lei Shi
16. Gene Analysis Using Mass Spectrometric Cleaved Amplified Polymorphic Sequence (MS-CAPS) with Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectro
metry (MALSI-TOF)
Hideyuki Kajiwara
17. Quantitative SNP Genotyping of Polyploids with MassARRAY and Other Platforms
Marcelo Mollinari and Oliver Serang
18. SNP Genotyping using KASPar Assays
Scott M. Smith and Peter J. Maughan
19. Skim Based Genotyping by Sequencing
Agnieszka A. Golicz, Philipp E. Bayer, and David Edwards
20. The Restriction Enzyme Target Approach to Genotyping by Sequencing (GBS)
Elena Hilario
21. Methods for the Design, Implementation and Analysis of Illumina Infinium (TM) SNP Assays in Plants
David Chagne, Luca Bianco, Cindy Lawley, Diego Micheletti, and Jeanne M.E. Jacobs
22. Use of the Illumina GoldenGate Assay for Single Nucleotide Polymorphism (SNP) Genotyping in Cereal Crops
Shiaoman Chao and Cindy Lawley