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Structural Proteomics Raymond J. Owens

Structural Proteomics By Raymond J. Owens

Structural Proteomics by Raymond J. Owens


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Summary

This updated and expanded volume reflects the current state of the structural protein field with improved and refined protocols that have been applied to particularly challenging proteins.

Structural Proteomics Summary

Structural Proteomics: High-Throughput Methods by Raymond J. Owens

This updated and expanded volume reflects the current state of the structural protein field with improved and refined protocols that have been applied to particularly challenging proteins. Beginning with a section on structural bioinformatics, the book continues with sections covering the challenge of producing high quality samples for structural studies, particularly mammalian membrane proteins and protein complexes, as well as protocols for structure determination, including the use of electrons in structural biology and more. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Authoritative and up-to-date, Structural Proteomics: High-Throughput Methods, Third Edition will aid researchers in expanding our knowledge of this vital and expansive area of protein science.
Chapter 9 is available open access under a CC BY 4.0 license.

Table of Contents

Part I: Structural Bioinformatics

1. The Protein Data Bank Archive

Sameer Velankar, Stephen K. Burley, Genji Kurisu, Jeffery C. Hoch, and John L. Markley

2. Computational Methods for the Elucidation of Protein Structure and Interactions

Nicholas S. Edmunds and Liam J. McGuffin

3. Methods for Molecular Modeling of Protein Complexes

Tejashree Rajaram Kanitkar,, Neeladri Sen, Sanjana Nair, Neelesh Soni, Kaustubh Amritkar, Yogendra Ramtirtha, and M.S. Madhusudhan

Part II: Protein Production

4. High-Level Production of Recombinant Eukaryotic Proteins from Mammalian Cells Using Lentivirus

Ester Behiels and Jonathan Elegheert

5. Transient Transfection and Expression of Eukaryotic Membrane Proteins in Expi293F Cells and Their Screening on a Small-Scale: Application for Structural Studies

Ganna O. Krasnoselska, Maud Dumoux, Nadisha Gamage, Harish Cheruvara, James Birch, Andrew Quigley, and Raymond J. Owens

6. Reproducible and Easy Production of Mammalian Proteins by Transient Gene Expression in High Five Insect Cells

Maren Schubert, Manfred Nimtz, Federico Bertoglio, Stefan Schmelz, Peer Lukat, and Joop van den Heuvel

7. SynBac: Enhanced Baculovirus Genomes by Iterative Recombineering

Hannah Crocker, Barbara Gorda, Martin Pelosse, Deepak Balaji Thimiri Govinda Raj, and Imre Berger

8. Gene Tagging with the CRISPR-Cas9 System to Facilitate Macromolecular Complex Purification

Sylvain Geny, Simon Pichard, Arnaud Poterszman, and Jean-Paul Concordet

9. Synthesis of Fluorescently Labeled Antibodies Using Non-Canonical Amino Acids in Eukaryotic Cell-Free Systems

Marlitt Stech, Nathanael Rakotoarinoro, Tamara Teichmann, Anne Zemella, Lena Thoring, and Stefan Kubick

Part III: Structure Determination

10. Solid-State NMR Spectroscopy for Studying Microtubules and Microtubule-Associated Proteins

Yanzhang Luo, Shengqi Xiang, Alessandra Lucini Paioni, Agnes Adler, Peter Jan Hooikaas, Jijumon A.S., Carsten Janke3, Anna Akhmanova, and Marc Baldus

11. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources

Pierre Aller and Allen M. Orville

12. From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example

Christoph A. Diebolder, Rebecca S. Dillard, and Ludovic Renault

13. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

Carlos Oscar S. Sorzano, Amaya Jimenez-Moreno, David Maluenda, Erney Ramirez-Aportela, Marta Martinez, Ana Cuervo, Robert Melero, Jose Javier Conesa, Ruben Sanchez-Garcia, David Strelak, Jiri Filipovic, Estrella Fernandez-Gimenez, Federico de Isidro-Gomez, David Herreros, Pablo Conesa, Laura del Cano, Yunior Fonseca, Jorge Jimenez de la Morena, Jose Ramon Macias, Patricia Losana, Roberto Marabini, and Jose-Maria Carazo

14. Setup and Troubleshooting of Volta Phase Plate Cryo-EM Data Collection

Ottilie von Loeffelholz and Bruno P. Klaholz

15. Cryo-Focused Ion Beam Lamella Preparation Protocol for In Situ Structural Biology

Jana Moravcova, Radka Dopitova, Matyas Pinkas, and Jiri Novacek

16. Protein and Small Molecule Structure Determination by the Cryo-EM Method MicroED

Emma Danelius and Tamir Gonen

Additional information

NPB9781071614082
9781071614082
1071614088
Structural Proteomics: High-Throughput Methods by Raymond J. Owens
New
Paperback
Springer-Verlag New York Inc.
2022-05-07
344
N/A
Book picture is for illustrative purposes only, actual binding, cover or edition may vary.
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